PhDs in Pink, Master students in Green.

Preprints

  1. Droghetti, R., Corigliano, M., Calabrese, L., Fuchs, P., Vaidyanathan, A., Keisers, J., Micali, G., Lagomarsino, M. C., & Ciandrini, L. (2025). The Hands-On Growth Laws Theory Cookbook (Number arXiv:2507.19194).
  2. Keisers, J., Kern, N., & Ciandrini, L. (2025). Paused in translation: A model for the transcript length-dependent impact of ribosome-targeting antibiotics (Number arXiv:2507.19395).
  3. Keisers, J., Zovo, L. V. D., Kern, N., & Ciandrini, L. (2024). Biologically Relevant Finite-Size Effects in a Driven Lattice Gas with Particle Pausing and Dynamical Defects (Number arXiv:2406.16569).

Refereed journal articles

  1. Droghetti, R., Fuchs, P., Iuliani, I., Firmano, V., Tallarico, G., Calabrese, L., Grilli, J., Sclavi, B., Ciandrini, L., & Cosentino Lagomarsino, M. (2025). Incoherent feedback from coupled amino acids and ribosome pools generates damped oscillations in growing E. coli. Nature Communications, 16(1), 3063.
  2. Calabrese, L., Ciandrini, L., & Cosentino Lagomarsino, M. (2024). How Total mRNA Influences Cell Growth. Proceedings of the National Academy of Sciences, 121(21), e2400679121.
  3. Soubrier, C., Foxall, E., Ciandrini, L., & Dao Duc, K. (2024). Optimal Control of Ribosome Population for Gene Expression under Periodic Nutrient Intake. Journal of The Royal Society Interface, 21(212), 20230652.
  4. Ciandrini, L., Crisostomo, R. L., & Szavits-Nossan, J. (2023). TASEPy: A Python-based Package to Iteratively Solve the Inhomogeneous Exclusion Process. SciPost Physics Codebases, 022.
  5. Eid, J., Socol, M., Naillon, A., Feuillard, J., Ciandrini, L., Margeat, E., Charlot, B., & Mougel, M. (2022). Viro-Fluidics: Real-time Analysis of Virus Production Kinetics at the Single-Cell Level. Biophysical Reports, 2(3).
  6. Calabrese, L., Grilli, J., Osella, M., Kempes, C. P., Lagomarsino, M. C., & Ciandrini, L. (2022). Protein Degradation Sets the Fraction of Active Ribosomes at Vanishing Growth. PLOS Computational Biology, 18(5), e1010059.
  7. Paloni, M., Bailly, R., Ciandrini, L., & Barducci, A. (2020). Unraveling Molecular Interactions in Liquid–Liquid Phase Separation of Disordered Proteins by Atomistic Simulations. The Journal of Physical Chemistry B, 124(41), 9009–9016.
  8. Zúñiga, A., Guiziou, S., Mayonove, P., Meriem, Z. B., Camacho, M., Moreau, V., Ciandrini, L., Hersen, P., & Bonnet, J. (2020). Rational Programming of History-Dependent Logic in Cellular Populations. Nature Communications, 11(1), 4758.
  9. Szavits-Nossan, J., & Ciandrini, L. (2020). Inferring Efficiency of Translation Initiation and Elongation from Ribosome Profiling. Nucleic Acids Res., 48(17), 9478–9490.
  10. Rogalla, P. S., Rudge, T. J., & Ciandrini, L. (2019). An Equilibrium Model for Ribosome Competition. Physical Biology.
  11. Fernandes, L. D., & Ciandrini, L. (2019). Driven Transport on a Flexible Polymer with Particle Recycling: A Model Inspired by Transcription and Translation. Physical Review E, 99(5), 052409.
  12. Rousset, Y., Ciandrini, L., & Kern, N. (2019). Exclusion Process Subject to Conformational Size Changes. SciPost, 6(077).
  13. Szavits-Nossan, J., Ciandrini, L., & Romano, M. C. (2018). Deciphering mRNA Sequence Determinants of Protein Production Rate. Physical Review Letters, 120(12), 128101.
  14. Szavits-Nossan, J., Romano, M. C., & Ciandrini, L. (2018). Power Series Solution of the Inhomogeneous Exclusion Process. Physical Review E, 97(5), 1–13.
  15. Fernandes, L. D., de Moura, A. P. S., & Ciandrini, L. (2017). Gene Length as a Regulator for Ribosome Recruitment and Protein Synthesis: Theoretical Insights. Scientific Reports, 7(1), 17409.
  16. Gorgoni, B., Ciandrini, L., McFarland, M. R., Romano, M. C., & Stansfield, I. (2016). Identification of the mRNA Targets of tRNA-specific Regulation Using Genome-Wide Simulation of Translation. Nucl. Acids Res., gkw630.
  17. Ciandrini, L., Neri, I., Walter, J. C., Dauloudet, O., & Parmeggiani, A. (2014). Motor Protein Traffic Regulation by Supply–Demand Balance of Resources. Physical Biology, 11(5), 056006.
  18. Ciandrini, L., Romano, M. C., & Parmeggiani, A. (2014). Stepping and Crowding of Molecular Motors: Statistical Kinetics from an Exclusion Process Perspective. Biophys. J., 107(5), 1176–1184.
  19. Kemp, A. J., Betney, R., Ciandrini, L., Schwenger, A. C. M., Romano, M. C., & Stansfield, I. (2013-01-01, 2013). A Yeast tRNA Mutant That Causes Pseudohyphal Growth Exhibits Reduced Rates of CAG Codon Translation. Molecular Microbiology, 87(2), 284–300.
  20. Turci, F., Parmeggiani, A., Pitard, E., Romano, M. C., & Ciandrini, L. (2013). Transport on a Lattice with Dynamical Defects. Physical Review E, 87(1), 012705.
  21. Ciandrini, L., Stansfield, I., & Romano, M. C. (2013). Ribosome Traffic on mRNAs Maps to Gene Ontology: Genome-Wide Quantification of Translation Initiation Rates and Polysome Size Regulation. Plos Computational Biology, 9(1), e1002866.
  22. Greulich, P., Ciandrini, L., Allen, R. J., & Romano, M. C. (2012). Mixed Population of Competing Totally Asymmetric Simple Exclusion Processes with a Shared Reservoir of Particles. Physical Review E, 85(1).
  23. Brackley, C. A., Ciandrini, L., & Carmen Romano, M. (2012). Multiple Phase Transitions in a System of Exclusion Processes with Limited Reservoirs of Particles and Fuel Carriers. Journal of Statistical Mechanics: Theory and Experiment, 2012(03), P03002.
  24. Ciandrini, L., Stansfield, I., & Romano, M. C. (2010). Role of the Particle’s Stepping Cycle in an Asymmetric Exclusion Process: A Model of mRNA Translation. Physical Review E, 81(5).
  25. Ciandrini, L., Maffi, C., Motta, A., Bassetti, B., & Cosentino Lagomarsino, M. (2009). Feedback Topology and XOR-dynamics in Boolean Networks with Varying Input Structure. Physical Review E, 80(2), 026122.

Code

  1. Ciandrini, L., Crisostomo, R. L., & Szavits-Nossan, J. (2023). Codebase Release 1.1 for TASEPy. In SciPost Physics Codebases (p. 022).

Datasets

  1. Calabrese, L., Cosentino Lagomarsino, M., & Ciandrini, L. (2021). Survey of protein degradation rates across growth conditions in E. coli and S. cerevisiae [Data set]. In Mendeley Data (p. V2).

Refereed conference proceedings

  1. Ciandrini, L. (2015). Molecular Motors with a Stepping Cycle: From Theory to Experiments. In M. Chraibi, M. Boltes, A. Schadschneider, & A. Seyfried (Eds.), Traffic and Granular Flow ’13 (pp. 619–627). Springer International Publishing.